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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400040352 | ||||||||
Common Name | LOC102584259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GATA | ||||||||
Protein Properties | Length: 329aa MW: 35876.2 Da PI: 6.1753 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.3 | 2.1e-18 | 229 | 262 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C tkTp+WR gp g+ktLCnaCG++y++ + PGSC0003DMP400040352 229 CQHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 262 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 8.0E-74 | 2 | 317 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 8.5E-17 | 223 | 273 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.556 | 223 | 259 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-15 | 227 | 286 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.7E-15 | 227 | 260 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.16E-15 | 228 | 275 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 229 | 254 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-16 | 229 | 262 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGSNVVDEID CGSFFDHIDD LIDFPLENEN VGLSSTDCKD FPSIWNDPLP DSDSLFSGSH 60 RNSASDLSAE LSVPYEDIVQ LEWLSTFVED SFSGGGLTLG KENIPVEKEP LSQGKFQTSS 120 PVSVLESSSS SSSSFSSSGE KTLPLSPCHR GPQRARTKRP RPTTFNPFPV FVAPGVPTES 180 ENFAESPMKK NLKPAAPEQK KKKKIKFSVP LAPVETNQNP VAQQAVRKCQ HCEITKTPQW 240 RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPALH SNSHKKVLEM RTTIVPDNDT 300 IARTSSPAIA TQPEFNPSNN VSVEEEHK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 161 | KRPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238342 | 0.0 | AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163536.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_006345792.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_006345793.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_006345794.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_006345791.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | M1C512 | 0.0 | M1C512_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400059989 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 7e-41 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400040352 |
Entrez Gene | 102584259 |
Publications ? help Back to Top | |||
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